FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3249432
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG85650.2635845280036634No Hit
TGGGGG68540.21092917162137875No Hit
GGGTGG53570.16485958161303269No Hit
GTGGGG53410.1643671878654485No Hit
GGTGGG50830.15642733868565337No Hit
GGGGTG50340.1549193828336768No Hit
GGGGGT48940.15061093754231508No Hit
GGCGGG45820.1410092594644233No Hit
AGGGGG44430.13673158878228564No Hit
CGGGGG43980.1353467313672051No Hit
GGGCGG41990.1292225841316267No Hit
GGGGGC40960.12605279938155345No Hit
GGGGCG40770.1254680818062972No Hit
GGGGAG38080.11718971192503798No Hit
GGGTTG37750.11617414982064557No Hit
GGAGGG36930.11365063186427658No Hit
TGGTGG35930.11057317094187538No Hit
GCGGGG35820.11023465024041124No Hit
GGGCTG35480.10918831352679484No Hit
GTTGGG35040.10783423072093831No Hit
TGTGGG34750.10694176705344195No Hit
GAGGGG34740.10691099244421795No Hit
GGGAGG33250.10232557566984014No Hit
GGGGGA33140.10198705496837601No Hit
GGTGCG33130.10195628035915201No Hit
ATGGGG32950.10140233739311978No Hit
GGATGG32750.10078684520863954No Hit
TGGGGC32570.10023290224260734No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)