FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2558490
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG134780.5267951017983263No Hit
GGGGGT74650.2917736633717544No Hit
GGGTGG70570.2758267571888106No Hit
GGGGTG67210.26269401092050393No Hit
GGGGAG61550.2405715871471063No Hit
GTGGGG59560.23279356182748417No Hit
AGGGGG58970.23048751411965654No Hit
TGGGGG56210.21969990111354742No Hit
GGTGGG54470.21289901465317432No Hit
GGGCGG53010.2071925237151601No Hit
GGGAGG51500.2012906050052961No Hit
CGGGGG50820.1986327873081388No Hit
GGGGGA50410.19703027957897043No Hit
GAGGGG49440.19323898080508425No Hit
GGGGCG48220.18847054317194908No Hit
GGAGGG46000.17979355010181786No Hit
GGCGGG42170.16482378277812304No Hit
GGGTGT41790.16333853171206453No Hit
GCGGGG40760.15931271961195861No Hit
GGGTTG38270.14958041657383847No Hit
GGGGGC38010.1485641921602195No Hit
GGGGTT37730.1474697966378606No Hit
AGGTGG37520.14664899999609146No Hit
GTGGGT36400.14227141790665587No Hit
GTTGGG36380.14219324679791595No Hit
ATGGGG35790.1398871990900883No Hit
GGGTAG34910.1364476703055318No Hit
GTGGTG34580.13515784701132308No Hit
AGGGTG32950.12878690164901954No Hit
AGGGGT32810.1282397038878401No Hit
GTGTGG32480.1269498805936314No Hit
GGTGGT32450.12683262393052153No Hit
TTGGGG32410.12667628171304168No Hit
TGGTGG31630.12362760847218478No Hit
GGGGAT31610.12354943736344484No Hit
GGTTGG31110.12159515964494683No Hit
GGTGGA31050.12136064631872706No Hit
TGGGGT30510.1192500263827492No Hit
GTAGGG30450.11901551305652942No Hit
TGGGGA30360.1186637430671998No Hit
CGGGGT30230.11815563086039031No Hit
GGAGGT30050.11745209088173102No Hit
GGCGGT28510.11143291550875711No Hit
GTGGGA27970.10932229557277925No Hit
GAGGGT27950.10924412446403935No Hit
GTTGGT27930.10916595335529941No Hit
GGTGTG27670.10814972894168044No Hit
GTGGTT27570.10775887339798083No Hit
TAGGGG27270.10658630676688202No Hit
TGGGTG27240.10646905010377214No Hit
GGGTAT27230.10642996454940218No Hit
GCAGGG26880.10506197014645358No Hit
TGTGGG26700.10435843016779428No Hit
GGTAGG26570.10385031796098479No Hit
GGATGG26500.10357671908039506No Hit
GGGGCT26370.10306860687358559No Hit
GGGCGT26320.1028731791017358No Hit
GGGGTA26240.10256049466677612No Hit
AGGAGG26150.10220872467744646No Hit
CGGTGG26000.10162244136189705No Hit
TGAGGG25970.10150518469878717No Hit
GGCAGG25640.10021536140457848No Hit
AGTGGG25630.10017627585020851No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)