FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5527916
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG177620.32131457858621587No Hit
GGGTGG159480.28849931873060297No Hit
TGGGGG123970.22426172901324837No Hit
GGGGTG117600.21273839906395106No Hit
GGTGGG117400.212376599065543No Hit
GTGGGG114520.20716667908846662No Hit
GGGGGT110420.19974977912110098No Hit
AGGGGG106850.19329164914951674No Hit
GGGCGG98760.1786568392139099No Hit
GGGGGC92510.1673505892636574No Hit
CGGGGG89420.16176077928825258No Hit
GGGGAG86850.15711164930870875No Hit
GCGGGG86850.15711164930870875No Hit
GGCGGG86690.15682220930998228No Hit
GTTGGG86480.15644231931165378No Hit
GGTTGG81750.1478857493493027No Hit
GAGGGG81670.14774102934993946No Hit
GGGGTT81540.1475058593509742No Hit
GGCTGG80380.14540741936020735No Hit
GGGGGA78750.14245874937318148No Hit
TTGGGG77870.14086682938018594No Hit
GGGGCG73990.1338479094110692No Hit
TGTGGG73870.13363082941202437No Hit
CGGGTT73730.1333775694131387No Hit
GGGTGT72960.13198463941926758No Hit
GGTGGT69580.12587021944617105No Hit
CTGGGG68060.12312053945826963No Hit
TGGGGT67960.1229396394590656No Hit
GGGTTT67840.12272255946002074No Hit
GGGTTG67660.12239693946145347No Hit
ACGGGG67430.12198086946328417No Hit
GGAGGG67210.12158288946503529No Hit
GGGTAG67100.12138389946591084No Hit
TGGGGC65620.11870657947769105No Hit
CGGGGT64400.11649959948740177No Hit
GGGAGG64280.11628251948835691No Hit
GTGGGA63430.11474486949512258No Hit
GTAGGG63350.11460014949575933No Hit
TCGGGG62160.11244743950523126No Hit
TTTGGG61740.1116876595085743No Hit
TGAGGG61530.1113077695102458No Hit
CAGGGG61180.11067461951303166No Hit
GTGTGG61050.11043944951406642No Hit
TGGGAG60760.10991483951637471No Hit
GTGGGT59690.10797920952489148No Hit
TGGGTG59130.10696616952934886No Hit
TGGTTG59110.10692998952950804No Hit
GGAGGT58460.1057541395346818No Hit
GGGCGT58390.10562750953523896No Hit
GCGGGT58030.1049762695381044No Hit
TTGGGT57950.10483154953874119No Hit
GTCGGG57900.10474109953913917No Hit
GGTGTG57890.10472300953921876No Hit
GGGGCT57380.10380041954327816No Hit
GGGTGC57230.10352906954447211No Hit
GGGTCT56390.10200950955115817No Hit
GTGCGG56360.10195523955139695No Hit
TGCAAT56120.10152107955330725No Hit
GGTCGG55850.10103264955545635No Hit
GTGGTG55740.1008336595563319No Hit
GGCGGT55520.100435679558083No Hit
GGGTGA55330.10009196955959533No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)