FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6591805
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG198750.30151073947120705No Hit
GCAATT144150.21868061934477734No Hit
GGTGGG113460.17212281006492153No Hit
GTGGGG111740.16951350957742228No Hit
TGGGGG111600.16930112465402117No Hit
GGGTGG111160.16863362918047484No Hit
GGGGGT110920.16826954074035866No Hit
GGGGTG110640.16784477089355648No Hit
CGGGGG97460.1478502473905099No Hit
AGGGGG96080.14575673885984186No Hit
GCGGGG90080.13665452785693752No Hit
GGGGGC89440.13568362534996106No Hit
GAGGGG88540.13431829369952542No Hit
GGGGCG85260.129342418351271No Hit
GTGGTG83200.12621732590694051No Hit
GTTGGG79660.12084702141522694No Hit
GGGGGA78910.11970924503986388No Hit
GGGCGG78800.11954237117147731No Hit
GGTTGG78100.1184804465544718No Hit
TTGGGG76440.11596216817700158No Hit
GGGGTT76390.11588631641864407No Hit
GGGAGG75550.11461200687823746No Hit
GGGTTG75120.11395968175636263No Hit
GGGGAG74390.1128522460843426No Hit
TGGTGG74030.11230611342416834No Hit
GGGTGT73390.11133521091719188No Hit
GGGTAG72090.10936306519989593No Hit
GTGTGG71470.10842250339626248No Hit
TGTGGG70990.10769432651603014No Hit
GGTGGT68670.10417480492824044No Hit
GGCGGG68470.1038713978948103No Hit
TGGGTG67570.10250606624437465No Hit
CGGTGG66720.10121658635229654No Hit
GGTGTG66150.10035187630702061No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)