FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14006534
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG388030.27703498952703076No Hit
GGGGGT273270.19510180034546734No Hit
GGGTGG246040.17566087370365857No Hit
GTGGGG244570.17461136352505197No Hit
GGGGTG232800.16620814257117428No Hit
GGTGGG222970.1591899894720564No Hit
TGGGGG214620.1532284860765697No Hit
GGGCGG200920.1434473367929568No Hit
CGGGGG200600.14321887199217165No Hit
GGGGGC199530.1424549428145464No Hit
GTGGGT184970.13205979437882348No Hit
GGGGCG184180.13149577190188522No Hit
GGGTGT184140.13146721380178708No Hit
GAGGGG182790.13050337792347486No Hit
GCGGGG182470.13027491312268974No Hit
AGGGGG179330.12803310226498574No Hit
GGGGTT178830.127676126013759No Hit
GGCGGG175830.1255342685063985No Hit
GTGTGG164370.11735237282828144No Hit
GGGGGA162540.11604583974879153No Hit
GGTGGT158830.11339707596468905No Hit
GGGGAG155550.11105531175664159No Hit
TTGGGG153570.10964168580178364No Hit
GGAGGG153380.10950603482631749No Hit
TGGTGG152930.10918475620021342No Hit
GGGGCT151540.10819236222180306No Hit
AGGGGT151300.10802101362121422No Hit
GGGTTG146550.10462973923456009No Hit
TGGGTG143900.10273776510305833No Hit
TGGGGT142450.10170253397450074No Hit
GGTGTG142300.10159544109913272No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)