FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9319777
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG281200.30172395755821196No Hit
GTGGGG194330.20851357280329777No Hit
TGGGGG183720.19712918023682327No Hit
GGGTGG171090.18357735383582677No Hit
GCAATT152390.16351249606079632No Hit
CGGGGG149350.16025061543854538No Hit
AGGGGG144920.15549728282125205No Hit
GGTGGG140300.15054008266506808No Hit
GAGGGG133510.1432545006173431No Hit
TGGTGG132220.14187034732698003No Hit
TTGGGG131400.1409904979486097No Hit
GGGGGT130740.1402823264977263No Hit
GCGGGG130390.1399067810313487No Hit
GTGTGG127460.13676292898424502No Hit
GGGCGG126990.13625862507225225No Hit
GTTGGG121540.13041084566723002No Hit
GGGGCG118700.1273635624543377No Hit
GGGGAG118530.12718115465638288No Hit
GGCGGG118000.12661247152158253No Hit
TGTGGG115160.12356518830869022No Hit
GGGGGA115100.12350080908588264No Hit
GGGGTG113850.12215957527739128No Hit
ATGGGG110360.11841485048408346No Hit
TGGGTG109190.11715945563933558No Hit
GGGGGC106130.11387611527614877No Hit
GTGGTG105600.11330743214134846No Hit
GGTTGG104390.11200911781472883No Hit
CGGTGG102290.10975584501646339No Hit
GGGTTG97990.10514200071525316No Hit
GTGGGT97100.10418704224360734No Hit
CTGGGG97070.10415485263220355No Hit
GGAGGG95760.10274923960090461No Hit
TGGGGT94270.10115048890118293No Hit
TAGGGG94260.101139759030715No Hit
GTAGGG93540.10036720835702398No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)