FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16954102
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG741560.4373926734662797No Hit
GGGGGT426220.25139638772964795No Hit
GTGGGG423530.2498097510561161No Hit
GGGGTG406230.23960573081369926No Hit
GGTGGG396700.2339846722639748No Hit
TGGGGG383920.22644667349529926No Hit
GGGTGG355930.20993739450193236No Hit
GGCGGG322190.1900366058904211No Hit
CGGGGG313500.1849110026588256No Hit
GCGGGG305840.18039292201969764No Hit
GAGGGG305560.18022777024698802No Hit
GGAGGG302680.17852906629911747No Hit
AGGGGG297180.17528501362089247No Hit
GGGGGC295620.17436488231579592No Hit
GGGGCG293740.17325600612760264No Hit
GGGCGG290670.1714452349053934No Hit
GGGGAG273680.1614240612684765No Hit
GGGAGG273030.16104067322468626No Hit
GGGGGA264150.15580300271875208No Hit
GTGGTG247140.14577003252664164No Hit
GTTGGG239980.14154686576735234No Hit
GGGGTT239940.14152327265696527No Hit
GTGTGG238670.14077419140217512No Hit
TGTGGG238340.14057954824148164No Hit
GGTGTG235110.138674404577724No Hit
GTGGGT233690.13783684915898228No Hit
GGTGGT225710.13313002363675763No Hit
GGGTTG225500.1330061598072254No Hit
TGGGTG224180.1322275871644514No Hit
GGTTGG217520.12829933428500076No Hit
TTGGGG211710.1248724350012758No Hit
GGGTGT211090.12450674179027589No Hit
GTAGGG209340.12347454321084066No Hit
TGGTGG206170.1216047892126637No Hit
TGGGGT202350.1193516471706965No Hit
GGGTAG194720.1148512613643589No Hit
GGGGTA188800.11135948102706944No Hit
GTGGCG186090.10976104779834403No Hit
CTGGGG185160.10921250798184416No Hit
TAGGGG184830.10901786482115067No Hit
GTCGGG183520.10824519045597343No Hit
GCTGGG182240.10749021092358652No Hit
GGCGGT181300.10693577282948988No Hit
GGCTGG176120.10388046503436159No Hit
GTGGAG175820.10370351670645842No Hit
GGGGCT175480.10350297526816814No Hit
TGAGGG175250.10336731488344236No Hit
ATGGGG173630.10241179391276518No Hit
CGTGGG173370.10225843869524909No Hit
GTTGTG173340.10224074386245878No Hit
GGAGTG172740.10188684720665242No Hit
TGGGCG172560.10178067820991049No Hit
GGATGG172190.10156244193882992No Hit
AGTGGG172100.10150935744045896No Hit
GTGAGG171990.10144447638689444No Hit
CGGGGT171490.10114956250705581No Hit
CGGTGG171200.10097851245674941No Hit
GGGCTG171110.10092542795837846No Hit
GATGGG170990.10085464862721717No Hit
CGGGTG170580.10061281924574951No Hit
GGCGTG169890.10020583809157219No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)