FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10863947
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG696390.6410101227482057No Hit
GGGGGT355810.32751448437662667No Hit
GTGGGG347310.3196904403160288No Hit
TGGGGG322540.2968902554476748No Hit
GGGTGG307790.2833132378131079No Hit
GGTGGG296430.2728566330450618No Hit
GGGGTG287770.26488531286097033No Hit
CGGGGG287660.26478406052606845No Hit
GGCGGG287490.2646275796448565No Hit
GCGGGG262390.24152363777179692No Hit
AGGGGG254550.23430710772061022No Hit
GGGGCG252840.23273309415077229No Hit
GGGGGC242840.22352833643242187No Hit
GGGGAG236270.2174808106114656No Hit
GGGCGG232930.21440642153353656No Hit
GGAGGG232220.2137528837355337No Hit
GGGAGG231270.2128784317522904No Hit
GGGGGA230030.21173704179521494No Hit
GAGGGG228340.21018143774081374No Hit
GGGGTT200370.18443573040258757No Hit
GTGGGT189000.17396992087682314No Hit
GGGTGT188970.17394230660366808No Hit
TTGGGG187540.17262602624994397No Hit
TGGTGG185980.1711900840458813No Hit
GTGTGG185640.1708771222834574No Hit
GGTGGT179360.16509653443633332No Hit
GTTGGG167410.15409684896290454No Hit
GGTTGG165830.15264249724340517No Hit
CTGGGG163980.15093961706551037No Hit
GGGTTG163450.1504517649064378No Hit
GGCTGG162530.14960492719634955No Hit
TGCGGG160830.14804011838422995No Hit
GGGGCT157990.14542596719221845No Hit
GTGGTG157050.1445607199666935No Hit
TGTGGG156850.1443766248123265No Hit
GTGGCG150390.1384303513262721No Hit
TCGGGG149360.13748226128128202No Hit
GTCGGG148370.13657099026716532No Hit
ATGGGG146390.13474844823893195No Hit
CGGTGG144580.1330823870919105No Hit
GGGTCG143500.13208827325832867No Hit
GGCGGT142670.13132427836770558No Hit
CGGGGT140080.12894024611865282No Hit
TAGGGG139690.12858126056763716No Hit
AGGTGG139350.12826829880521323No Hit
GTAGGG138870.12782647043473241No Hit
AGGGGT138010.12703486127095429No Hit
TGGGTG134570.12386842461584173No Hit
GGGGTA133780.12314124875609206No Hit
GGGGAT132080.12157643994397248No Hit
GGCCGG131470.12101494972315312No Hit
GGGCTG129700.11938570760700509No Hit
GGTGTG129360.11907274584458116No Hit
GCGTGG128340.11813386055730941No Hit
TGGGGT127730.11757237033649004No Hit
TGGGCG127590.11744350372843314No Hit
GGGTAG125360.11539084275724099No Hit
GAGGGT125150.11519754284515563No Hit
GTGGAG124910.11497662865991522No Hit
GCGGGT124850.11492140011360513No Hit
GTGGGA124800.11487537632501336No Hit
CGTGGG123730.11389046724914988No Hit
AGGGTG123360.1135498912135709No Hit
GGGCGT123330.11352227694041586No Hit
GGATGG122630.11287794390013133No Hit
GGCGCG122540.11279510108066616No Hit
GAGTGG122470.1127306677766377No Hit
GGTAGG122090.11238088698334041No Hit
GGCGTG121640.11196667288601464No Hit
GGGCCG121240.11159848257728062No Hit
GGAGGT120900.1112855208148567No Hit
GGGTGC120620.11102778759874289No Hit
TGGGGC119600.11008890231147114No Hit
GTGCGG118080.10868977913828187No Hit
GGGGCC118060.10867136962284518No Hit
CCGGGG117780.10841363640673136No Hit
GGGTTT117640.10828476979867446No Hit
GTGGGC117560.10821113173692766No Hit
TGAGGG117020.10771407482013673No Hit
GGGGTC116780.10749316063489633No Hit
GTGAGG116510.10724463217650086No Hit
GCCGGG116070.10683962283689344No Hit
GGGGCA115490.10630574688922911No Hit
AGCGGG115360.10618608503889056No Hit
GGGTGA114940.10579948521471985No Hit
CGCGGG114420.10532083781336563No Hit
GGTGAG114400.10530242829792892No Hit
CAGGGG114020.10495264750463161No Hit
GCTGGG112920.10394012415561305No Hit
GGCAGG112910.1039309193978947No Hit
TGGGGA112870.1038941003670213No Hit
AGTGGG112600.10364557190862583No Hit
GGTGGA112590.10363636715090749No Hit
TGGCGG110580.10178621084951905No Hit
GGAGTG110480.10169416327233555No Hit
CGGGTG110170.1014088157830667No Hit
GGCGGC109790.10105903498976937No Hit
ACGGGG109030.10035947340317473No Hit
GGGATG109010.10034106388773804No Hit
TGGGAG108910.10024901631055454No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)