FastQCFastQC Report
Wed 8 May 2024
EGAF00005479714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12832087
Total Bases76.9 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT569300.44365347585314846No Hit
GGGGGG351180.27367333154770535No Hit
TGGGGG214290.16699543885573717No Hit
GGGGGT213630.1664811031907748No Hit
GTGGGG208260.16229628118949008No Hit
GGGTGG204220.1591479234827507No Hit
GGTGGG202430.15775298281565578No Hit
GGGGTG202050.15745685016007138No Hit
GGCGGG190440.14840921823550604No Hit
GGGGCG189400.14759874991495928No Hit
CGGGGG171190.1334077613407702No Hit
AGGGGG167620.13062567297120103No Hit
AATTTC165390.12888784186079785No Hit
GCGGGG161060.12551348818005986No Hit
GGGCGG154380.12030778781347103No Hit
GGGGGC153490.1196142139622339No Hit
GGGTTG152110.1185387848445853No Hit
TGGTGG151290.11789976174569265No Hit
GAGGGG148020.1153514623147427No Hit
GTGGTG144950.11295902217620564No Hit
GGGAGG144270.11242910058200198No Hit
GGTGGT143770.11203945235096988No Hit
GGGGAG142310.11090167951635616No Hit
GGAGGG136410.10630383039017736No Hit
GGTTGG133310.10388801135777835No Hit
GTGTGG132840.1035217420206082No Hit
TGTGGG132750.1034516053390224No Hit
TGGGTG132420.10319443750654123No Hit
GGGGGA131190.10223590285820226No Hit
CTGGGG130390.10161246568855088No Hit
TTGGGG129920.10124619635138073No Hit
GTTGGG129160.10065393104021192No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)