FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9099707
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG367380.40372728484554504No Hit
GGGGGT244010.2681514910315244No Hit
GGTGGG223280.24537053775467715No Hit
GGGTGG222790.24483205887837928No Hit
GGGGTG219680.24141436641861108No Hit
GTGGGG218470.24008465327509995No Hit
TGGGGG215820.2371724715971624No Hit
GGGTGT166380.18284105191518804No Hit
GGCGGG164550.18082999815268777No Hit
TTGGGG161310.17726944395022828No Hit
AGGGGG160890.17680789062768726No Hit
GGGGGA159140.17488475178376622No Hit
GCGGGG158310.17397263450350656No Hit
GGAGGG155720.17112638901450342No Hit
TGTGGG153660.16886257986108785No Hit
CGGGGG152590.16768671782509043No Hit
GGTGGT151610.16660976007249464No Hit
GTTGGG150650.1655547810495437No Hit
GAGGGG150630.16553280231989886No Hit
GGGCGG148890.16362065284080024No Hit
GGGGTT148690.16340086554435215No Hit
GGTTGG144560.15886225787269853No Hit
TGGGGT143670.15788420440350442No Hit
TGGTGG141330.15531269303506146No Hit
GTGTGG141140.15510389510343575No Hit
GGGGAG139450.15324669244844916No Hit
GGTGTG137170.15074111726894063No Hit
GGGAGG136520.15002680855548425No Hit
GGGTTG136230.1497081169756345No Hit
GGGGGC135100.14846631875070265No Hit
GTGGGT134420.14771904194277904No Hit
GGGGCG132830.1459717329360165No Hit
TGGGTG124620.13694946441682132No Hit
GTGGTG119820.13167456930206653No Hit
GTTTGG117360.1289711855557547No Hit
GGTTTG115990.1274656425750851No Hit
TTTGGG114670.12601504641852754No Hit
GGCGGT110990.12197096016388219No Hit
TGTTGG109500.12033354480534372No Hit
AGGGTG107340.11795984200370407No Hit
GGTGTT105330.11575097967440051No Hit
GGTTGT105080.11547624555384035No Hit
GGAGGT104810.11517953270363541No Hit
ATGGGG104060.11435533034195497No Hit
CGGGGT103720.11398169193799317No Hit
GAGGGT103230.11344321306169529No Hit
GTGTGT101770.11183876579762403No Hit
GGTCGG100470.11041014837071127No Hit
GTAGGG99860.10973979711654451No Hit
GGTAGG99500.10934417998293791No Hit
TGGGTT99490.1093331906181155No Hit
CGTGGG98930.10871778618806079No Hit
GGATGG98700.10846503079714545No Hit
TAGGGG98640.10839909460821101No Hit
GGGCGT98260.10798149874495959No Hit
GATGGG97580.107234221937036No Hit
TCGGGG97310.10693750908683103No Hit
AGGGGT97230.10684959416825178No Hit
GGCTGG96930.10651991322357961No Hit
TTGGGT96810.10638804084571074No Hit
GCGGGT96790.10636606211606593No Hit
GGGAGT96180.10569571086189918No Hit
GGGGCT96000.10549790229509588No Hit
TGTGGT95830.10531108309311497No Hit
TGCGGG95730.1052011894448909No Hit
TGGCGG95360.10479458294646189No Hit
AGTGGG95280.10470666802788264No Hit
TGGTGT94540.10389345503102462No Hit
GTCGGG94000.1033000293306147No Hit
AGGTGG93960.10325607187132509No Hit
CGGTGG93620.1028824334673633No Hit
GGTGAG92480.10162964587760903No Hit
GTGGTT92370.10150876286456256No Hit
GTGAGG92060.10116809255506798No Hit
TTGGTG91990.10109116700131114No Hit
GTGCGG91880.10097028398826469No Hit
GGGGTA91810.10089335843450785No Hit
GGGCTG91340.10037685828785477No Hit
GTTGTG91090.10010212416729461No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)