FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3965200
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT131940.332744880460002No Hit
GGGGGG79580.20069605568445473No Hit
GAGGGG52470.13232623827297488No Hit
GGGGGT50440.12720669827499242No Hit
GGGCGG49440.1246847573892868No Hit
GGGGTG48070.12122969837587007No Hit
GTGGGG47320.11933824271159084No Hit
GGTGGG46870.1182033693130233No Hit
TGGGGG46660.11767376172702512No Hit
GGCGGG46310.11679108241702814No Hit
GGGTGG45550.11487440734389186No Hit
GGGGGC43470.10962877030162414No Hit
GGGGCG43250.1090739433067689No Hit
GGAGGG41780.1053666902047816No Hit
GGGAGG41620.1049631796630687No Hit
GCGGGG41560.10481186320992636No Hit
CGGGGG40690.10261777463936245No Hit
GGGGAG40460.10203772823565015No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)