FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4466220
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG221410.49574360421116737No Hit
GTGGGG113920.2550702831477178No Hit
TGGGGG113440.2539955488086122No Hit
GGGTGG109300.24472596513382683No Hit
GGGGGT109060.24418859796427406No Hit
AGGGGG95920.21476774543125957No Hit
CGGGGG95270.21331237601372077No Hit
GGGGTG86840.1944373541831795No Hit
GAGGGG85890.19231027580369978No Hit
GGGGGA85170.19069817429504143No Hit
GGTGGG85160.19067578399631008No Hit
GGGCGG84950.1902055877229514No Hit
GGCGGG83240.18637684663988788No Hit
GGAGGG82730.1852349414045882No Hit
GGGGCG81890.1833541563111535No Hit
GGGAGG81600.1827048376479439No Hit
GCGGGG81110.18160771301010697No Hit
GGGGAG80320.17983887941032908No Hit
GGGGGC80280.17974931821540363No Hit
TTGGGG65570.14681318878156474No Hit
GTGGGT64230.14381288875156173No Hit
GGGGTT64120.1435665954655167No Hit
GGGTGT62290.1394691707976768No Hit
GTGTGG62210.13929004840782586No Hit
GGGGCT60910.1363793095727483No Hit
GTTGGG60050.13445374388185086No Hit
TGGTGG58490.13096085727975784No Hit
GGGTTG57970.12979656174572682No Hit
GTGGTG57710.1292144139787113No Hit
TGGGGT56930.12746797067766477No Hit
TGGGTG55190.12357205869840716No Hit
GGTGGT55160.12350488780221305No Hit
GTCGGG54280.12153454151385289No Hit
ATCTCG54050.12101956464303147No Hit
CGGGGT53600.12001200120012002No Hit
AGGGGT53590.11998961090138864No Hit
CGGTGG53360.11947463403056723No Hit
TGCGGG53230.11918356014705947No Hit
ATGGGG53010.11869097357496944No Hit
GGGGAT52180.11683257878026608No Hit
CTGGGG52020.11647433400056423No Hit
TCGGGG51500.11531003846653322No Hit
AGGTGG50230.11246647052764978No Hit
GGTGTG49820.11154846827966379No Hit
GTGGGA49780.11145890708473834No Hit
GTAGGG49710.11130217499361876No Hit
GGGTAG48640.10890641302936264No Hit
TGTGGG48570.10874968093824307No Hit
GGCGGT48340.10823470406742167No Hit
GGGTCG47190.10565981971331462No Hit
TGAGGG47080.10541352642726959No Hit
GTGGCG46990.10521201373868731No Hit
GGGGTA46810.1048089883615227No Hit
GGGAGT46770.10471942716659725No Hit
TGGCGG46320.1037118637236858No Hit
GGGGCA46150.10333122864525257No Hit
GGGCGT46100.10321927715159576No Hit
AAGGGG46010.10301776446301346No Hit
GTGCGG45670.10225649430614704No Hit
GGAGGT45660.10223410400741566No Hit
GAGGGT45230.10127132116196694No Hit
GGTTGG44790.10028614801778685No Hit
GTGAGG44670.10001746443301046No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)