FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14507707
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG740300.510280501253575No Hit
TGGGGG412670.28444881055290133No Hit
GGGTGG367020.2529827766717373No Hit
GGGGGT364400.2511768400064876No Hit
GGTGGG362100.2495914757583676No Hit
GGGGTG360760.24866782876163682No Hit
GTGGGG340940.23500612467566379No Hit
GAGGGG318760.2197176990133589No Hit
GGGGGC299180.20622142424023315No Hit
CGGGGG287290.19802578036625637No Hit
GGGGCG286730.19763977863627935No Hit
AGGGGG282450.1946896225571691No Hit
GGCGGG274510.1892166694571375No Hit
GCGGGG268830.18530150905308468No Hit
GGGGGA260080.17927023202219344No Hit
GGAGGG259100.17859472899473364No Hit
GTTGGG253670.1748518907915634No Hit
TGGGGT253170.1745072463897982No Hit
GGGGAG249850.17221880756207716No Hit
GGTGGT246680.1700337620548857No Hit
TTGGGG246130.16965465321294398No Hit
TGTGGG244810.16874479199228384No Hit
GGGAGG242090.16686992644668108No Hit
GGTTGG238410.1643333436496891No Hit
TGGGTG238270.16423684321719484No Hit
GGGGTT234330.16152104533128495No Hit
GGGCGG232370.1601700392763653No Hit
GGGTGT215930.1488381313463251No Hit
GTGGGT214040.14753537550765258No Hit
TGGTGG207770.1432135347095168No Hit
GTGTGG206140.1420899939597622No Hit
GGGGTA205090.14136624071605527No Hit
GGTGTG204180.14073898790484257No Hit
GTGGTG201990.13922944542511095No Hit
AGGGGT201680.1390157658960165No Hit
GGGTTG200260.1380369757950033No Hit
GAGGTG188600.12999986834583852No Hit
ATGGGG184720.12732542778814046No Hit
GGTCGG178610.12311387319856956No Hit
GTTGGT178000.12269340702841601No Hit
GGGTTT177500.12234876262665079No Hit
TGTGGT176700.12179733158382644No Hit
AGTGGG173140.11934346344325814No Hit
TGGGCG171930.11850942399098631No Hit
TGGGAG169180.11661387978127763No Hit
AGGTGG166700.11490444354852218No Hit
TTGGTG166650.11486997910834565No Hit
GTGGCG166490.11475969289978077No Hit
GGGATG163540.11272629092936604No Hit
TCGGGG163080.11240921807974204No Hit
TTGGGT162980.11234028919938899No Hit
GGGGTC158800.10945906200063181No Hit
TTTGGG157110.10829416392266539No Hit
GTGTTG156960.10819077060213582No Hit
TGGGGC156670.107990876849112No Hit
GGGGAT154320.10637104816081548No Hit
CTGGGG154120.1062331904001094No Hit
AGGGTG154090.10621251173600348No Hit
GATGGG151850.10466850481609534No Hit
GCGGGT151280.104275610198083No Hit
GCGTGG150130.103482928074023No Hit
CGGGGT149520.10306246190386945No Hit
TGCGGG149070.10275228194228075No Hit
GGGGCA148930.10265578150978648No Hit
GGCGTG148690.1024903521969392No Hit
GGGTAG148400.10229045844391536No Hit
GGTTGT148320.10223531533963293No Hit
GTCGGG146520.10099459549327816No Hit
TAGGGG146140.10073266574793659No Hit
GGGCGT145960.10060859376330113No Hit
GTAGGG145390.10021569914528879No Hit
GCTGGG145180.10007094849654738No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)