FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005479727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47405510
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2598540.5481514701561063No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1067620.2252101074326592No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA598400.12623005216060326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)