FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7405899
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATTT293860.3967918006983352No Hit
GGGGGG213280.2879866441602836No Hit
GGGTGG141800.19146898978773544No Hit
GTGGGG134330.18138243581231664No Hit
GGGGGT131710.17784471540862223No Hit
GGTGGG126720.17110684334204396No Hit
GGGGTG125740.16978357387806667No Hit
TGGGGG121840.1645175015214223No Hit
GGCGGG108650.1467073747562585No Hit
CGGGGG104010.14044209892681495No Hit
GGGAGG103230.13938888445548608No Hit
GGGGCG101650.1372554500135635No Hit
GTGTGG100130.13520303206943546No Hit
GTGGTG99560.13443337534038743No Hit
GTTGGG94620.12776301702197126No Hit
GGGGAG94550.1276684977745443No Hit
GGAGGG93190.125832123824535No Hit
GGGTGT90160.12174079068591132No Hit
GCGGGG89920.1214167246947332No Hit
GGGCGG88230.119134760006854No Hit
GGGGGC87970.11878368851641105No Hit
GTGGGT87910.11870267201861652No Hit
GGTGTG86780.11717686131015288No Hit
GGTTGG86320.11655573482706151No Hit
GGGTTG86300.11652872932779666No Hit
AGGGGG86260.11647471832926697No Hit
TTGGGG82410.11127615972078475No Hit
GGGGTT81440.10996639300643986No Hit
TGGTGG80970.10933176377371605No Hit
GTGGCG78190.1055779993759029No Hit
GAGGGG78040.10537545813141659No Hit
TGGGTG77850.10511890588840059No Hit
GGTGGT77760.10499738114170878No Hit
TGTGGG76810.10371461992662875No Hit
TGGGGT76070.10271541645382957No Hit
GGATGG75760.10229683121522452No Hit
GGGGGA75070.10136514149058744No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)