FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6799082
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTG144050.21186683731715547No Hit
GGGGGG126160.18555446161702419No Hit
GGTGGG120520.1772592241129023No Hit
GGAAGT116450.17127312187145263No Hit
GGGGTT115660.17011120030615898No Hit
GTGGGG115270.1695375934574697No Hit
GGGTCG113990.16765498636433565No Hit
GGCGCG110660.1627572663486041No Hit
GGGGGT109920.161668884122886No Hit
GTGGGT99730.14668156671738922No Hit
GTGGCG99010.1456226002275013No Hit
GGCGGG97030.14271044238030958No Hit
GGAAGG95190.14000419468392938No Hit
AGATGG87480.1286644285213798No Hit
TGGCGG87150.12817906888018116No Hit
GGGGGC86830.12770841710689768No Hit
GATGCG84990.12500216941051748No Hit
GCAAGA84200.12384024784522381No Hit
GCCGGG83950.12347255114734607No Hit
GGTGTG83480.1227812813553359No Hit
GGGTGG82420.12122224735633429No Hit
GTGGTA81070.11923668518779447No Hit
TGGCCG80700.1186924940749354No Hit
CGGCAG79810.11738349383049065No Hit
GGGCGG78860.11598624637855523No Hit
TTTATG77270.11364769538005277No Hit
TTTGCT76960.11319175147468438No Hit
GGAGGC76430.11241223447518356No Hit
GGGCGT76370.11232398726769291No Hit
GCGGGG73970.10879409896806656No Hit
AAGTGG73570.10820578425146218No Hit
GTCCGG73100.10751451445945202No Hit
AGTAAA72970.10732331217655561No Hit
GATGGA72600.10677912106369654No Hit
GGGTTC71930.10579369391338418No Hit
GAGGAG71010.1044405700651941No Hit
GGGTAG70880.10424936778229765No Hit
GGGAGA69900.10280799672661692No Hit
GGGATG69560.10230792921750319No Hit
GCGGGT69290.10191081678379522No Hit
TGCGGG69020.10151370435008726No Hit
GGCTGG68570.10085185029390734No Hit
GAGGTG68320.1004841535960296No Hit
GGGGAG68260.10039590638853892No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)