FastQCFastQC Report
Sun 12 May 2024
EGAF00005479743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40029320
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2147950.5365941764686485No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG548050.1369121433988886No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC459860.11488079237918607No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)