FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005479751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45736450
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGCTTGACCGGCAAGTGATGGTGACTCTGTCTCCCACAGAAGCAGAC2308160.5046653161756105No Hit
CGGCAAGTGATGGTGACTCTGTCTCCCACAGAAGCAGACAGGGAGGATGG1451520.3173661270168542No Hit
CCGGCAAGTGATGGTGACTCTGTCTCCCACAGAAGCAGACAGGGAGGATG1208400.26420939972385266No Hit
CTGGCTTGACCGGCAAGTGATGGTGACTCTGTCTCCCACAGAAGCAGACA905370.1979537108804903No Hit
GTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCCAGGAGATGGTCACGC788060.17230458419925465No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA497130.10869448765700004No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG463370.10131306649291759No Hit
GGTGACTCTGTCTCCCACAGAAGCAGACAGGGAGGATGGAGACTGGGTCA457770.10008866013868588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)