FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005479847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43450135
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1032690.23767244911897278No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG443480.102066426260816No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG438430.1009041744059023No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)