FastQCFastQC Report
Thu 12 May 2022
EGAF00005479867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47886371
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1120730.23403945143389546No Hit
GCCAGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC846050.17667866291225118No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG555480.11599960247561879No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)