FastQCFastQC Report
Sun 12 May 2024
EGAF00005479874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47048838
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1077040.22891957501692178No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA766010.16281167241579908No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA679560.14443714847962877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)