FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005479883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41365267
Sequences flagged as poor quality0
Sequence length25-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1248960.30193447077230273No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC677090.16368563510057846No Hit
GCCGGTTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC623600.15075449651999104No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)