FastQCFastQC Report
Sun 12 May 2024
EGAF00005479925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51051393
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC856190.16771138840423022No Hit
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT727680.1425387158387627No Hit
TTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGGC598670.1172681027528475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)