FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16264166
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1216670.7480678689580517No Hit
CGGGGG653430.40176053294094516No Hit
GCGGGG514920.3165978507597623No Hit
AGGGGG512980.31540504443941364No Hit
GGCGGG507650.31212790130154844No Hit
GGGCGG470690.28940309635305No Hit
TGGGGG466970.2871158594913505No Hit
GGGGCG450740.2771368664092582No Hit
GTGGGG448320.27564893275191604No Hit
GAGGGG447570.2751877962878638No Hit
GGGGGC446040.274247077901197No Hit
GGGGGT424730.2611446538359237No Hit
GGGTGG423710.26051750824481257No Hit
GGAGGG404230.24854025715182693No Hit
GGGAGG401800.24704617500829737No Hit
GGGGTG400760.2464067324448115No Hit
GGTGGG396190.243596874257186No Hit
GGGGAG390240.23993852497570428No Hit
GGGGGA389950.2397602188762707No Hit
CGCGGG283530.17432802887033988No Hit
CAGGGG280560.17250192847269266No Hit
CCGGGG269850.1659168997660255No Hit
GGCCGG269520.16571399972184248No Hit
CGGGCG269290.1655725845395331No Hit
GCCGGG254890.15671876442972854No Hit
CGGGGC247730.1523164483195757No Hit
CGGTGG246220.1513880269052837No Hit
GTCGGG240580.14792028069561022No Hit
CGGGGT239920.14751448060724417No Hit
AGCGGG238080.14638315914876915No Hit
CTGGGG236760.14557155897203705No Hit
CGGCGG235220.14462469209918294No Hit
GGCTGG229570.14115079740332212No Hit
GGCGGC228200.1403084547956532No Hit
GCGGGC225180.13845161196706918No Hit
GGCGCG224550.13806425733726527No Hit
GGCAGG217540.1337541685199229No Hit
TGCGGG216180.13291797439844133No Hit
TAGGGG215970.1327888561885067No Hit
GGGCCG215500.13249987733770058No Hit
GCGCGG214020.13158990138197063No Hit
CGTGGG213100.13102424065273313No Hit
AAGGGG212890.1308951224427985No Hit
GGGGCC212100.1304093920339967No Hit
CGGAGG211420.12999129497325593No Hit
GGGCAG210660.12952401002301625No Hit
ACGGGG207290.12745197017787446No Hit
CGGGTG206700.12708920949282No Hit
CGAGGG205630.12643132147077202No Hit
GGCGGT203470.12510324845430132No Hit
AGGTGG200390.12320951470859312No Hit
AGGGCG198190.12185684774737297No Hit
GACGGG196810.1210083566535167No Hit
GGGCGT196450.12078701115077158No Hit
TGGGTG196430.12077471417839686No Hit
ATGGGG196360.1207316747750853No Hit
CGGGGA195010.11990162913979112No Hit
AGGCGG194180.1193913047862399No Hit
GGGGCT193960.11925603809011787No Hit
GTGGTG193950.1192498896039305No Hit
GGGGCA193930.11923759263155577No Hit
GGGCGC192480.11834606213438795No Hit
GCAGGG191950.11802019236645765No Hit
TGGCGG189840.11672286178092378No Hit
GGGTCG189150.11629861623399565No Hit
GCTGGG187830.11548701605726355No Hit
GGGCTG187500.11528411601308053No Hit
GTGAGG187090.1150320280793986No Hit
AGGGGC186760.11482912803521558No Hit
GTGTGG186670.11477379165952929No Hit
GTAGGG186360.11458318858772101No Hit
TTGGGG186200.11448481280872318No Hit
GGCGTG186170.11446636735016108No Hit
AGGGTG185190.11386381570379939No Hit
GCGAGG184450.11340882772593443No Hit
GTGCGG184440.11340267923974706No Hit
GTGGCG184210.11326126405743768No Hit
TGGTGG183640.11291080034475792No Hit
TGGGGT183580.11287390942763373No Hit
TGGGGC183320.11271404878676226No Hit
GTGGGT182710.11233899112933303No Hit
TCGGGG182590.11226520929508467No Hit
CGGGAG182350.11211764562658792No Hit
GGGGTA182180.11201312136140272No Hit
GTGGGC182140.11198852741665327No Hit
GGTGGT180710.1111092938918602No Hit
GGGTTG180330.11087565141674033No Hit
GGACGG179380.11029154522894072No Hit
GGCGGA179380.11029154522894072No Hit
GCGGCG179110.1101255361018819No Hit
GAGGGT179060.11009479367094507No Hit
TGGGCG178840.10995952697482306No Hit
AGGGGT178780.10992263605769886No Hit
GGGAGC178640.10983655725107577No Hit
GCGTGG178640.10983655725107577No Hit
GGGATG178400.10968899358257903No Hit
AGAGGG177410.10908029345002997No Hit
GCGGGT176320.10841010845560725No Hit
GGGTGT176260.10837321753848306No Hit
GGTTGG175900.10815187203573795No Hit
TGTGGG175370.10782600226780764No Hit
GGGTGC175050.107629250709812No Hit
GAGGGC173810.10686683842257881No Hit
GGGGTT173570.10671927475408208No Hit
GAGCGG173540.10670082929551998No Hit
GGAAGG173370.10659630503033479No Hit
GAGTGG172820.10625813829002975No Hit
AGGAGG172290.10593226852209944No Hit
GTGGGA172180.10586463517403844No Hit
GGGACG172110.10582159577072689No Hit
GCGGTG171900.10569247756079224No Hit
GAAGGG171680.10555721086467021No Hit
GGTAGG171090.10519445017961573No Hit
GAGAGG170230.1046656803675024No Hit
GGCGAG169030.10392786202501868No Hit
TGAGGG168550.1036327346880252No Hit
GGGTAG167690.10310396487591186No Hit
AGGGGA166280.10223702832349349No Hit
GAGGCG165510.10176359488706646No Hit
GGTCGG165470.10173900094231698No Hit
GGAGGT163890.10076754012471342No Hit
GTTGGG163310.10041092792584631No Hit
GGATGG163160.10031870063303583No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)