FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8677794
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG599680.6910512049490919No Hit
CGGGGG272250.31373180787651794No Hit
GTGGGG260410.3000877872878752No Hit
GGGGGT253950.2926434990275178No Hit
GGGTGG253900.29258588069732927No Hit
GGGGTG252740.2912491354369555No Hit
GGCGGG241020.27774339884076527No Hit
AGGGGG235100.27092138854644393No Hit
TGGGGG230830.2660007831483439No Hit
GGAGGG227100.26170245571628No Hit
GGGGGA226610.2611377960804324No Hit
GGGAGG226190.26065380210684885No Hit
GAGGGG212700.2451083766219848No Hit
GGGCGG208270.2400033925672815No Hit
GGTGGG208120.23983053757671594No Hit
GGGGGC201010.23163721102390766No Hit
GGGGCG198450.22868715251825522No Hit
GCGGGG188750.2175091964616814No Hit
GGGGAG183800.21180498177301743No Hit
GTGAGG123420.1422250862373548No Hit
CGCGGG121780.14033520500717117No Hit
TGGGGT121380.139874258365663No Hit
CAGGGG120980.13941331172415478No Hit
GTGGTG117810.1357603095902023No Hit
GTGTGG116270.13398566502039574No Hit
CGGGTG115170.1327180617562482No Hit
TGGTGG114970.1324875884354941No Hit
CGTGGG114510.13195749979775967No Hit
GGGGTT114420.1318537868034203No Hit
GGAAGG113920.13127760350153508No Hit
GGGTTG113530.13082818052606457No Hit
GGGGTA113190.1304363758807826No Hit
TTGGGG113000.13021742622606622No Hit
TGGGTG112500.12964124292418097No Hit
AGGTGG110990.12790116935248752No Hit
GGCGGT110750.12762460136758258No Hit
AGGGTG110710.12757850670343177No Hit
GTCGGG109600.1262993797732465No Hit
TGTGGG109530.12621871411098257No Hit
CGGGGT109010.12561948347702193No Hit
GAAGGG108970.12557338881287108No Hit
GGGATG108430.12495111084683504No Hit
GGGTGT107190.12352217625815963No Hit
GGTGTG107170.1234991289260842No Hit
GTTGGG106950.1232456082732547No Hit
TGCGGG104660.12060668875062026No Hit
GGGTAG104310.12020336043930058No Hit
GTAGGG104170.12004202911477273No Hit
GGCAGG104140.1200074581166596No Hit
GTGGGA104140.1200074581166596No Hit
CCGGGG104010.11985765045816944No Hit
GGGGCA103220.11894728084119076No Hit
TAGGGG102770.11842871586949402No Hit
GGGCGT102640.11827890821100387No Hit
AGCGGG102610.11824433721289074No Hit
GGCGTG101820.11733396759591205No Hit
AGGGGT101670.11716111260534647No Hit
CGGTGG101640.11712654160723336No Hit
TGGCGG101400.11684997362232843No Hit
GAGAGG99890.11510990005063498No Hit
GGGGAA99280.11440695642233499No Hit
CGAGGG99250.11437238542422187No Hit
ATGGGG99090.11418800676761859No Hit
GTGGGT98580.11360029979969564No Hit
GACGGG98570.11358877613365795No Hit
GGAGGT98550.11356572880158251No Hit
GGGCTG97660.11254012252422678No Hit
AAGGGG97080.11187174989403989No Hit
GATGGG96870.1116297529072481No Hit
GGCCGG96810.11156061091102186No Hit
GGTAGG96730.11146842158272022No Hit
GGCGCG96590.11130709025819235No Hit
GGGCAG95850.11045433897140218No Hit
GGATGG95490.1100394869940448No Hit
TGGAGG95160.10965920601480053No Hit
GAGGGT95140.10963615868272512No Hit
GGGTGC95120.10961311135064972No Hit
GGCTGG94920.10938263802989562No Hit
GAGGTG94750.10918673570725462No Hit
GCAGGG94250.10861055240536939No Hit
GTGCGG93340.10756189879593822No Hit
GGGGCT93230.10743513846952348No Hit
TGGGAG92740.10687047883367594No Hit
GGTGGT91980.10599468021481036No Hit
GAGTGG91380.10530326025254806No Hit
CGGCGG90880.1047270769506628No Hit
GGTGAG90710.1045311746280218No Hit
GGTTGG90550.10434679597141855No Hit
TGGGGC90220.10396651499217427No Hit
CGGGGC89830.10351709201670378No Hit
CTGGGG89750.10342490268840214No Hit
CGGGGA89690.10335576069217592No Hit
CGGGCG89630.10328661869594968No Hit
GGAGAG89230.10282567205444149No Hit
TGAGGG89110.10268738806198903No Hit
GGCGAG88820.10235320174689559No Hit
TGGGCG88790.10231863074878246No Hit
GGGGAT88620.10212272842614148No Hit
GGCGGC87740.10110864581482344No Hit
GGACGG87330.10063617550727755No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)