FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14282122
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG788280.5519347895221732No Hit
CGGGGG413540.289550810446795No Hit
GGCGGG391530.2741399352281125No Hit
GGGGGT359820.2519373521665758No Hit
TGGGGG332180.2325844856947728No Hit
GTGGGG328130.22974877262636464No Hit
GGGTGG320410.22434341339473224No Hit
GGTGGG318300.2228660418948949No Hit
GGGCGG310970.21773375132910922No Hit
GGGGCG307810.21552119495968458No Hit
GCGGGG303550.2125384449173589No Hit
AGGGGG300740.21057095017113003No Hit
GGGGTG299150.20945767022575498No Hit
GGAGGG292410.20473848353907073No Hit
GGGGGC287060.20099254158450686No Hit
GGGGGA282250.1976246947057307No Hit
GAGGGG282220.1976036894237425No Hit
GGGAGG269060.1883893723915816No Hit
GGGGAG267690.18743013118078672No Hit
CCGGGG193070.13518299311544882No Hit
CAGGGG189510.1326903663195147No Hit
GGCCGG188780.13217923779113497No Hit
CGCGGG184090.12889541204031166No Hit
CGGGGT182930.12808320780343424No Hit
GTCGGG178880.12524749473502605No Hit
GGCTGG175630.12297192251963679No Hit
GGGGTT173890.12175361616432068No Hit
GCCGGG173010.12113746122599989No Hit
GGCGGT172060.12047229396303993No Hit
TTGGGG171160.11984213550339368No Hit
CTGGGG170990.11972310557212718No Hit
CGGCGG170690.11951305275224508No Hit
CGGTGG170220.11918397000109647No Hit
CGTGGG168900.1182597375936153No Hit
GTGTGG168310.11784663371451386No Hit
TGCGGG165220.11568308966972835No Hit
GGTGGT164920.11547303684984628No Hit
GGCAGG163070.11417771112724007No Hit
TGGTGG160690.11251129208950882No Hit
GGGTGT159180.11145402622943566No Hit
TCGGGG159130.11141901742612198No Hit
CGGGTG157630.11036875332671153No Hit
CGGGCG157300.11013769522484124No Hit
GGGCCG156930.10987863008031999No Hit
TGTGGG156710.1097245913457398No Hit
TGGCGG156210.10937450331260298No Hit
TGAGGG156070.10927647866332468No Hit
TAGGGG155470.10885637302356051No Hit
GTGGGT155430.10882836598090956No Hit
CGGGGC155320.10875134661361946No Hit
GGGCGT155120.10861131140036473No Hit
CGGGGA153470.10745602089101325No Hit
GTAGGG152810.10699390468727266No Hit
GCTGGG152600.1068468677133552No Hit
TGGGGT152380.106692828978775No Hit
GGGGCT151880.10634274094563818No Hit
GGGGTA151570.10612568636509337No Hit
CGAGGG151030.10574759128930561No Hit
GGCGCG150760.10555854375141173No Hit
GGTCGG148810.10419320042217815No Hit
GGTTGG148240.10379410006440218No Hit
GGGTTG147970.10360505252650831No Hit
GGACGG146430.10252678138444693No Hit
AGCGGG145420.10181960355751056No Hit
GCAGGG144980.10151152608835017No Hit
CGGGAG144610.10125246094382895No Hit
GGCGTG144360.10107741692726054No Hit
GTGCGG144100.10089537115002939No Hit
GGTGGA144050.1008603623467157No Hit
GGGAGT143100.10019519508375577No Hit
GACGGG143090.10018819332309303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)