FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22148360
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG680720.30734555515622825No Hit
GGGGGT434160.19602354305239758No Hit
GTGGGG407100.18380593416397423No Hit
TGGGGG390160.17615751233951407No Hit
CGGGGG383880.173322087955948No Hit
GGTGGG371950.16793568462856845No Hit
GGGTGG371250.1676196341399544No Hit
GGGGTG369160.16667599768109242No Hit
GGCGGG344060.1553433301607884No Hit
GGGGGC343620.1551446698536596No Hit
GCGGGG337150.1522234603374697No Hit
AGGGGG321950.1453606497275645No Hit
GAGGGG314120.14182539926206728No Hit
GGGCGG303270.13692661668854939No Hit
GGAGGG302650.13664668625577694No Hit
GGGGCG293840.13266896510622006No Hit
GGGAGG279060.12599578478948328No Hit
GGGGAG277330.12521468858190854No Hit
GTGGGT270650.12219866391913442No Hit
GGGTGT261380.11801325244848827No Hit
GGGGGA260830.11776492706457725No Hit
GGGGTT259490.11715991612923035No Hit
GGGTTG250770.11322283004249524No Hit
GTTGGG250570.11313252990289124No Hit
TTGGGG243850.1100984452121963No Hit
GTGGTG243770.1100623251563547No Hit
TGGGGT242230.10936701408140377No Hit
CGGGGT237940.10743007608689764No Hit
GGTGGT237840.10738492601709562No Hit
GTCGGG232270.10487006712912378No Hit
TGTGGG231740.10463077175917315No Hit
GGTTGG231120.10435084132640068No Hit
GGCGGT229900.1038000104748162No Hit
GGTGTG226250.1021520329270429No Hit
CGGTGG226210.10213397289912209No Hit
GTGTGG225140.10165086715224061No Hit
GGGGCT222810.10059887052585384No Hit
TGGTGG222480.10044987529550721No Hit
TGGGTG221890.10018348988367536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)