FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10101869
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG360650.35701314281545327No Hit
GGGTGG225870.22359228772418252No Hit
GGTGGG208460.20635785318538577No Hit
GTGGGG206770.20468489543865592No Hit
GGGGTG204830.20276445873530927No Hit
TGGGGG203290.20123998836254955No Hit
CGGGGG203160.20111129930510876No Hit
GGGGGT189520.18760884743209402No Hit
GGGCGG170610.16888953915359622No Hit
GGCGGG165700.16402905244564148No Hit
GGGGAG159650.158040061695514No Hit
AGGGGG158190.15659478458887163No Hit
GGGGCG158090.15649579300622488No Hit
GAGGGG157670.15608002835910859No Hit
TGGTGG149130.14762614720107736No Hit
GGGTGT145800.14432972749894105No Hit
GGTGGT145070.14360708894561985No Hit
GGGGGC141990.1405581482001004No Hit
GCGGGG140860.1394395433161923No Hit
GGGGTT138420.13702414869961194No Hit
GGGTTG137200.13581645139132173No Hit
GGGAGG137010.13562836738429293No Hit
GTTGGG135030.13366833404788758No Hit
GGAGGG134520.13316347697638922No Hit
TGTGGG133990.13263882158836152No Hit
GGGGGA131960.1306292924606328No Hit
TGGGTG127640.12635285609029379No Hit
GGTTGG123860.12261097426624716No Hit
GTGGTG121820.12059154598025375No Hit
GGTGTG120540.11932445372237553No Hit
CGGGTG120150.11893838655005326No Hit
GTGGGT117420.11623591634379736No Hit
CGGGGT115410.11424618553259798No Hit
GGTTTG114600.11344435371315942No Hit
CGGTGG114390.11323647138960127No Hit
GGGGTA113980.11283060590074966No Hit
TGCGGG113010.11187038754907631No Hit
GTGTGG109210.10810870740850034No Hit
GGGTCG105900.10483208602289339No Hit
GTCGGG105300.10423813652701297No Hit
CGTGGG104760.1037035819807206No Hit
GTTGGT104530.1034759013406331No Hit
GTGCGG104470.10341650639104506No Hit
GAGGGT102110.1010803050405821No Hit
GGTGTT101070.10005079258105605No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)