FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27034916
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG709840.2625641596223195No Hit
TGGGGG443820.16416548140930048No Hit
GTGGGG441790.1634146005854059No Hit
GGTGGG441290.16322965456966834No Hit
GGGGGT425810.15750372592243303No Hit
GGGTGG419660.15522888992886089No Hit
CGGGGG386580.14299286152766297No Hit
GGGGTG383820.14197195952079156No Hit
GGCGGG347370.12848939497352238No Hit
GGGGGC334970.12390273378323055No Hit
AGGGGG320620.11859478313156217No Hit
GGAGGG316680.11713740852755009No Hit
GGTGGT305770.1131018864641562No Hit
GCGGGG303440.11224003803081911No Hit
GAGGGG298260.11032399730777782No Hit
GTTGGG295640.10935488018531295No Hit
GGGGTT290540.10746843082478968No Hit
TGTGGG287490.10634026012879048No Hit
GGGGCG286740.10606284110518413No Hit
GGTGTG284580.1052638743171978No Hit
TTGGGG281700.10419858526654938No Hit
GTGTGG281590.10415789714308711No Hit
TGGTGG280150.1036252526177629No Hit
GTGGGT279980.10356237097241211No Hit
GGGGGA279330.10332194115195328No Hit
GTGGTG275040.10173510433692488No Hit
GGGCGG274180.10141699718985626No Hit
GGGGAG274010.10135411554450548No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)