FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11874507
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG232750.19600813743256879No Hit
TGGGGG173420.14604395786705082No Hit
GGGGGT170190.14332384493941516No Hit
GGTGGG169840.14302909586056922No Hit
GGGGTG166380.14011529068112047No Hit
GGGTGG163600.13777414085485823No Hit
GTGGGG160120.13484349287090402No Hit
GGGTTG140050.11794173854965094No Hit
GGTGGT137680.1159458662157511No Hit
GGGGTT136410.11487634812965287No Hit
TGGGTG133460.11239203446509399No Hit
TGTGGG132730.11177727210064384No Hit
TGGGGT131720.1109267104731169No Hit
GTTGGG130810.11016036286811738No Hit
GGTGTG129490.10904873777075545No Hit
CGGGGG126960.10691812300081174No Hit
GTGGTG125640.1058064979034498No Hit
GGTTGG124340.10471171561059335No Hit
GGAGGG123580.10407168903938498No Hit
GTGTGG123230.10377693996053901No Hit
TTGGGG121960.10270742187444076No Hit
GGGTGT121000.10189896725817753No Hit
TGGTGG119530.10066102112702448No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)