FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19444364
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG803400.4131788522370801No Hit
GGGGGT460550.23685526561835604No Hit
TGGGGG448130.23046781062111363No Hit
GGTGGG445760.22924894843564955No Hit
GTGGGG441570.22709408237780365No Hit
GGGTGG432410.2223832057453769No Hit
GGGGTG406860.20924315138309488No Hit
CGGGGG399890.205658565124578No Hit
GGCGGG394050.20265512412748496No Hit
AGGGGG332620.17106242199539157No Hit
GGAGGG324760.16702011955752322No Hit
GGGCGG319340.16423267945405673No Hit
GGGGAG318120.16360524828685577No Hit
GGGGGC309780.15931608768484276No Hit
GGGGTT309180.15900751497966198No Hit
GAGGGG301540.15507835586702656No Hit
GGGAGG301360.15498578405547234No Hit
GGGGGA301340.15497549829863297No Hit
TTGGGG294350.15138062628327675No Hit
GCGGGG291800.15006919228625837No Hit
TGGTGG290850.1495806188363888No Hit
GGGGCG287620.1479194691068322No Hit
TGGGGT285600.14688060766605684No Hit
GTGGGT281540.14479259902766684No Hit
GGTGGT280060.1440314530215542No Hit
CGGGGT270630.1391817186717961No Hit
TGTGGG270530.1391302898875993No Hit
GTTGGG265960.1367799944498056No Hit
GGGTTG265040.13630684963519507No Hit
GGGTGT255170.13123082863497104No Hit
TGGGTG251610.129399963917565No Hit
GTGTGG243880.12542451889915246No Hit
GGTTGG242890.12491537393560417No Hit
CTGGGG233790.1202353545736955No Hit
GTCGGG232240.11943820841864511No Hit
GGCGGT230010.11829134653105651No Hit
TGCGGG228080.11729877099605829No Hit
CGGTGG227290.11689248360090358No Hit
GTGGTG226870.11667648270727704No Hit
TCGGGG226130.11629590970422073No Hit
GGTGTG225990.1162239094063452No Hit
GTAGGG225320.11587933655222665No Hit
GGGGTA224930.11567876429385913No Hit
CGTGGG214380.11025302756109687No Hit
ATGGGG210080.10804158984063453No Hit
GGGGCT206280.10608729604115619No Hit
GGCTGG204300.10506900611405957No Hit
CGGGTG203470.10464214720522615No Hit
TAGGGG203220.10451357524473416No Hit
GCGGGT203100.10445186070369801No Hit
TTGGGT202900.1043490031353044No Hit
TGAGGG200770.10325357003191259No Hit
AGGGGT198140.10190099300753679No Hit
GGGTAG194500.1000289852627733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)