FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005479988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49034458
Sequences flagged as poor quality0
Sequence length25-101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA921730.18797597395692636No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA817730.1667663992533577No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC725560.14796941367231997No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA494000.10074547984195113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)