FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005480049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50385483
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2315420.459541094406101No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA751690.14918781268803158No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA640250.12707033095227052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)