FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50585752
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1808300.35747219889110277No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1377800.27236918411334476No Hit
CCGGGAGACACAGACAGGGTGGCTGGAGACTGCGTCATTACTATTTCTCC643460.12720182552589115No Hit
GGCTAAGTTGCTGCTAACACTCTGACTGGCCCTGCAGGAGAGGGTGGCTC612570.1210953629788878No Hit
GCCAGTTATTATAGTGTTGACAGTAATAAACTGCAAAATCTTCAGACTGC594530.11752914140724843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)