FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005480052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50585752
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTAC1341150.2651240610201861No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA938410.18550875748570467No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC873300.1726375442634519No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA765020.15123230746871175No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG632540.1250431149071383No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG575810.11382849463224347No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA509080.1006370331313845No Hit
CTCAGTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTT507700.10036422904220145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)