FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44286588
Sequences flagged as poor quality0
Sequence length25-101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2037730.4601235028537308No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT977810.22079145044996465No Hit
CAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGTCC711220.16059489613424272No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA515060.11630157645018849No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG499530.11279487144053636No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC481610.10874849965863255No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)