FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005480180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44286588
Sequences flagged as poor quality0
Sequence length25-101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1192430.26925307499417206No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1149010.2594487522949386No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC624690.1410562493547708No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA464570.1049008336338758No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA448740.10132638802519627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)