FastQCFastQC Report
Thu 12 May 2022
EGAF00005480197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44717594
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCCAGGAGATGGTCACGC983850.22001407320796376No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC731020.16347480591196387No Hit
GTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGGTGAGGAAGAT677020.15139902204935266No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG627120.14024010325779157No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA527300.11791779316212764No Hit
GCCGGCTGTCCAAGGGTGACGGGCAGGGAGAGTGGAGACTGAGTCATCAC447220.10000985294512939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)