FastQCFastQC Report
Thu 12 May 2022
EGAF00005480198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44717594
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1326110.29655218033421027No Hit
CCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTG877730.19628292166166184No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA713460.15954793990034438No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA686580.153536883044289No Hit
CTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGGT587950.13148068744485672No Hit
CATGGACCTCCTGCACAAGAACATGAAACACCCGTGGTTCTTCCTCCTCC553350.12374324074770213No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC457030.10220362034683708No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT451580.1009848606792217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)