FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005480294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40312167
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCAGTCTACTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAAC687510.17054652507269083No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC490730.12173247843510868No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA489760.12149185629241911No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG457870.11358109327141853No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA409010.10146068307367352No Hit
CGGAACTCCTGCCCAGGATTTCACTGTCCTCTTTGACACCGGCTCCTCCA405340.10055028795648718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)