FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39306468
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC613670.15612443224356867No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT555110.14122612085115355No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG402010.10227578830028686No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)