FastQCFastQC Report
Thu 12 May 2022
EGAF00005480363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47173003
Sequences flagged as poor quality0
Sequence length25-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1231640.2610900137097483No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC772520.1637631591951015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)