FastQCFastQC Report
Sun 12 May 2024
EGAF00005480407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48786958
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1638220.3357905610757695No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT640730.13133223022431528No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)