FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005480432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41168752
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1399120.33984999108061376No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1046220.2541296369634911No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG731060.17757642981259184No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA553000.1343251794467804No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA541020.13141520539655904No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG533590.129610438519001No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAGGTGGCATAGGGGAGCTTA523220.12709153777602974No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG439630.10678730314681387No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA434940.10564808959960699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)