FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47207008
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT13514102.8627317367794203No Hit
TCAGACCGCGTTCTCTCCCTCCCCAATACGGAGAGAAGAACGATCATCAA1562160.33091696893817124No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1153030.2442497520707095No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC794760.16835635929309478No Hit
TCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG733870.15545785066488432No Hit
CGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGG476790.10099983460082876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)