FastQCFastQC Report
Sun 12 May 2024
EGAF00005480457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42569532
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1041450.24464680513753356No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA517780.12163159322493844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)