FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52934008
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1954580.3692484423246394No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC826440.15612647355174766No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC578820.10934747280047262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)