FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005480576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48371680
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA573990.11866240742517109No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA566760.11716773120139719No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC565920.11699407587249398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)