FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005480597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29024367
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT1014170.3494201957961736No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC889190.30635982517723814No Hit
TGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG610680.21040252144000243No Hit
CGGCGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGT496250.17097702768160283No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG483600.1666186208298703No Hit
CGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAG415150.1430349884977681No Hit
GCGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTA363720.1253153944752697No Hit
TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC307820.10605571518579543No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)