FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005480598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29024367
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC772670.26621424680855227No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT687010.23670111392954754No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA596450.20549974440441715No Hit
TGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG447910.15432205636043672No Hit
ATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTC371410.1279648923954138No Hit
CAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAA346890.11951681840296464No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGAT324580.11183017359172726No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT291730.10051209730086448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)